Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
TGCT rs10778499 chr12:107068387 C/T 5.07E-5 134 46.77 45.1 28.67 KM Plot
TGCT rs10778500 chr12:107074410 T/A 5.07E-5 134 46.77 45.1 28.67 KM Plot
TGCT rs10778501 chr12:107080038 T/C 0.000113 133 42.27 45.1 28.8 KM Plot
TGCT rs10778502 chr12:107090201 T/C 0.000149 130 42.1 41.65 28.8 KM Plot
TGCT rs10778503 chr12:107090616 C/T 5.59E-5 133 46.77 41.65 28.67 KM Plot
TGCT rs10778504 chr12:107120424 C/T 0.000103 134 46.77 41.65 28.8 KM Plot
TGCT rs10778505 chr12:107143126 G/C 0.00012 132 44.52 45.1 28.8 KM Plot
TGCT rs10778507 chr12:107144186 C/T 0.000136 131 42.18 45.47 28.8 KM Plot
TGCT rs10778509 chr12:107162918 G/A 0.000103 134 42.27 45.47 28.8 KM Plot
TGCT rs1079389 chr10:1161980 A/G 1.35E-13 134 42.03 66.9 17.1 KM Plot
TGCT rs1079390 chr10:1161653 C/A 1.35E-13 134 42.03 66.9 17.1 KM Plot
TGCT rs10794720 chr10:1156165 A/G 1.35E-13 134 17.1 47.88 42.1 KM Plot
TGCT rs10804848 chr3:172430119 T/C 1.49E-5 134 24.15 37.3 45.1 KM Plot
TGCT rs10807282 chr6:42622455 G/A 2.46E-8 134 37.62 51.67 20.6 KM Plot
TGCT rs10829218 chr10:27552499 A/G 1.05E-6 128 43.68 66.9 20.6 KM Plot